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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 358aa MW: 40553.2 Da PI: 5.0178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8.1e-18 | 81 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r +lg+++t eeAa+a+++a++ l+g Tp57577_TGAC_v2_mRNA35209 81 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDTGEEAARAYDEAARLLRG 130 799******.7*********33....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.94E-29 | 80 | 137 | No hit | No description |
SMART | SM00380 | 4.5E-30 | 81 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-14 | 81 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-19 | 81 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-26 | 81 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MENMVDQPIE NIRNLSHAAV HYTKSKKTQI LNSKMVNKRN VRECEGVEKT SEERNTEWKQ 60 IREEAASVAA ALLRVRRARK RYIGVRQRPS GRWVAEIKDT IQNIRLWLGT YDTGEEAARA 120 YDEAARLLRG ANTRTNFFLC KSSHYVPSLP PKIAKTLLLR LKARNIASSC IPTSTSTTTF 180 PTNLYDDQEN KEQPEPHFFH QIEENFIEIY DGASYGSSDI TTIDCGSGTS EENVNQEGSR 240 EDFRLGYHCA NSVDDGGNNQ IAECNVEFEN CDVGVIDFQF LDTVGSLSHF YSSSPFEIAE 300 EMVGPMADEK YDVDDSLLLR ETFRMKYERK FSACLYTLIG VSECLRLQVG PENGNDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35209 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024638733.1 | 0.0 | ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A2K3PKU2 | 0.0 | A0A2K3PKU2_TRIPR; Ap2/erf domain-containing transcription factor | ||||
STRING | XP_004516576.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35209 |