PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35208
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 487aa    MW: 55144.1 Da    PI: 9.3948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35208genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012130150323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C+ Cgk F++   L  H+ +H
  Tp57577_TGAC_v2_mRNA35208 130 CKECGKGFPSLKALCGHMASH 150
                                ******************999 PP
2zf-C2H2130.0003433455123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+Cp+C k F++   L  H r+H
  Tp57577_TGAC_v2_mRNA35208 433 YECPICYKIFKSGQALGGHKRSH 455
                                99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951128155IPR007087Zinc finger, C2H2
SMARTSM003550.063128150IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.06E-7129150No hitNo description
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
PfamPF139122.3E-7130152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-7428455No hitNo description
PfamPF139128.8E-11433455IPR007087Zinc finger, C2H2
SMARTSM003550.09433455IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868433455IPR007087Zinc finger, C2H2
PROSITE patternPS000280435455IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MHGILSSNKE RVISLGLSPF FGSDLVLIQL SHLLINNNNS DHHHHHHHHF ILISLLYITL  60
DHHTDFSQNY QLSMEERKRK FVCNDGGNGN PIYGLRENPK KTIKFVHSHN HVASAAAATT  120
ALEHEMIKFC KECGKGFPSL KALCGHMASH SEKEKKIKED TQSDDDDDDT CVVAASTMNL  180
RKNKRRIRFK SLTLSNQPSS SSVNGSSSVS EMEQEQQEVA RCLMLLSRDF FSHKGRFVSE  240
SSNNNSVLLE TKSEIVIRNG NKLVSSNAHG FVEEKKKLKS VGGIGISINS DSTAFKYGSK  300
KIKIVDSNVS KYEFKRPKME EEEDKSRFEN CKKKAKYEEL DHDRKFDSRK KAKYEEIYES  360
DRKSLKYEFF RSEKDKHCSY DSITDDESDE QKSSESDSFS AAKSHNSKLV NKKKSSNKGK  420
KKKKLKSKKS KEYECPICYK IFKSGQALGG HKRSHFVGGS EDNTFVIKQS VAPCLIDLNQ  480
PAPVDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419428KKKKKLKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505370.11e-105dentin sialophosphoprotein-like
TrEMBLA0A2K3NYR70.0A0A2K3NYR7_TRIPR; Dentin sialophosphoprotein
STRINGAES899891e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-34C2H2-like zinc finger protein