![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA35100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 476aa MW: 50654 Da PI: 9.0613 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 55 | 79 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+F+H++ Tp57577_TGAC_v2_mRNA35100 55 VPNCAYYMRTGFCGYGGRCRFNHPR 79 689********************96 PP | |||||||
2 | zf-CCCH | 41.8 | 1.7e-13 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Tp57577_TGAC_v2_mRNA35100 99 GEPPCQYYLKTGTCKFGASCKFHHPK 124 579*********************96 PP | |||||||
3 | zf-CCCH | 37.4 | 4.2e-12 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Tp57577_TGAC_v2_mRNA35100 145 GENECSYYLKTGQCKFGVTCKFHHPQ 170 6789********************97 PP | |||||||
4 | zf-CCCH | 36.2 | 1e-11 | 301 | 327 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G C+++H++ Tp57577_TGAC_v2_mRNA35100 301 PGEPVCQYYLRTGDCKFGLACRYHHPQ 327 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.9 | 5.4e-11 | 346 | 370 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Tp57577_TGAC_v2_mRNA35100 346 GVQPCLFYLQNGHCKFGSTCKFDHP 370 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.164 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-4 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-9 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-5 | 58 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-11 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 102 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.361 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 149 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 346 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 348 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence Send to blast |
MDLYVRSPTR NGSNPLNQHE WRSPTADTTA LGGVVDSMWH LTIGGGESYP ERHGVPNCAY 60 YMRTGFCGYG GRCRFNHPRD RAAVAAAVRA TGDYPERLGE PPCQYYLKTG TCKFGASCKF 120 HHPKNGGGYL SQAPLNIYGY PLRPGENECS YYLKTGQCKF GVTCKFHHPQ PAGTSLPASA 180 PQFYQQVQSP TVPLPEQFGG ASPSVRVARP PVLPGSYVQG AYGPVLLSPG VVPFPGWSPY 240 SAPVSPVLSP GAQPAVGATS LYGLTQLSSS TSAFARPYTP LPSSPGPAGS SLQEKVFPER 300 PGEPVCQYYL RTGDCKFGLA CRYHHPQDQG VARPLLSPIG LPLRPGVQPC LFYLQNGHCK 360 FGSTCKFDHP VGSMRYSPSA SSLIDVPVAP YPVGSLLSSL VPSTTYSEFR PELKSGPKKE 420 SYPARMHSSG NGSGTSVGLN FSQGGSVSLS DAQLSSQSSA SLNGSRSSRQ SGEIR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639704.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | I1JFH1 | 0.0 | I1JFH1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G17260.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA35100 |