PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35001

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 835aa MW: 94916.2 Da PI: 9.3295

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35001	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37	1.2e-11	45	97	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....t 48 +fY++YA+ vGFsvr s++ k+k+ ++ ++ +vCskeg++ee+k + Tp57577_TGAC_v2_mRNA35001 45 DFYKNYAHAVGFSVRSSSEIKEKDGVNVRWKYLVCSKEGFKEEKKIDtpellV 97 6******************************************9877554441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-9	45	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MDSASPSKDF DDLENDTPEE WIPPCGNELK PVIDKVFDTL TEGVDFYKNY AHAVGFSVRS 60 SSEIKEKDGV NVRWKYLVCS KEGFKEEKKI DTPELLVTEN NLSKSRTKLG YNTSQVFPYS 120 HSILHFNLHS FSPNSSSSSS SSKPFIFLQT TMRTKQTARR APPFNFTPPR IRNPFTTTIF 180 IITFKPITSS NTLPSSLWST TTKSNSNTTT SPTKIKKMKP SFSAPPRRSQ RLKENFATQK 240 TQSNVEQINI DCDSTDEEET VVPPTSKSYS NSSKRSSDSS KSGKEKKSVN AMFQDETPMY 300 SSEAEEKIFQ EKWRTKPTAP GRFFNFEALQ SHPLEIKAYT DFQGWSSFLS LRETYYPRLI 360 QAFYFKAKCD RKNCTFRTNV KGVKFEINPD VIADIFKIPN DGFMSYGKNW YSLAKTTFEE 420 VRTPIFTLES PKDSRKTSDL NFLPKIFHII TQGSVLPRQG KYAELDDNEI MVIHHLFERK 480 KLNLPFLMIN FMMDVASKNN KKFCVSYGMT LTKIFDHFKV PFEGEIAETE HKKFSLKNLK 540 HFKIEPISQA PVKVYTRAKR KRNEQYDDTA QSQQIPEPFV ENDFVPNPFF ARHPAETEIP 600 QNEAFISSSS SQMLGPRAEI NLNIPLAYPQ NESPIEAAPQ PEPQLAPILA ETQLVNQPDP 660 NSVLEHFTTS STSAPLFSSP PSFNLSPMFN ESFNNHFFNF SPPQNPFSQP FFTQNISIHS 720 PTLNLPNIAN FNAGPSNIAP RPTPQLPRSK VERNTSKTRS DVKKLFKAVQ ILDSHLTYIT 780 LENSIMRDWI SNIFCERFNL PKTPLNPYPI PVHVMPQPST SSSSDGSSPS RPAP*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MDSASPSKDF DDLENDTPEE WIPPCGNELK PVIDKVFDTL TEGVDFYKNY AHAVGFSVRS  60
SSEIKEKDGV NVRWKYLVCS KEGFKEEKKI DTPELLVTEN NLSKSRTKLG YNTSQVFPYS  120
HSILHFNLHS FSPNSSSSSS SSKPFIFLQT TMRTKQTARR APPFNFTPPR IRNPFTTTIF  180
IITFKPITSS NTLPSSLWST TTKSNSNTTT SPTKIKKMKP SFSAPPRRSQ RLKENFATQK  240
TQSNVEQINI DCDSTDEEET VVPPTSKSYS NSSKRSSDSS KSGKEKKSVN AMFQDETPMY  300
SSEAEEKIFQ EKWRTKPTAP GRFFNFEALQ SHPLEIKAYT DFQGWSSFLS LRETYYPRLI  360
QAFYFKAKCD RKNCTFRTNV KGVKFEINPD VIADIFKIPN DGFMSYGKNW YSLAKTTFEE  420
VRTPIFTLES PKDSRKTSDL NFLPKIFHII TQGSVLPRQG KYAELDDNEI MVIHHLFERK  480
KLNLPFLMIN FMMDVASKNN KKFCVSYGMT LTKIFDHFKV PFEGEIAETE HKKFSLKNLK  540
HFKIEPISQA PVKVYTRAKR KRNEQYDDTA QSQQIPEPFV ENDFVPNPFF ARHPAETEIP  600
QNEAFISSSS SQMLGPRAEI NLNIPLAYPQ NESPIEAAPQ PEPQLAPILA ETQLVNQPDP  660
NSVLEHFTTS STSAPLFSSP PSFNLSPMFN ESFNNHFFNF SPPQNPFSQP FFTQNISIHS  720
PTLNLPNIAN FNAGPSNIAP RPTPQLPRSK VERNTSKTRS DVKKLFKAVQ ILDSHLTYIT  780
LENSIMRDWI SNIFCERFNL PKTPLNPYPI PVHVMPQPST SSSSDGSSPS RPAP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3NGH4	0.0	A0A2K3NGH4_TRIPR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	9e-07	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35001