PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34885
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 540aa    MW: 60178.2 Da    PI: 6.5734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34885genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-184895148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WTt Ed +l+d+v+++G g+W+++ r  g++R++k+c++rw ++l
  Tp57577_TGAC_v2_mRNA34885 48 KGPWTTAEDAILIDYVTKHGEGNWNAVKRNTGLNRCGKSCRLRWANHL 95
                               79******************************************9986 PP
2Myb_DNA-binding50.83.9e-16101144146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +g+++++E++l+v++++q+G++ W++ a+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA34885 101 KGAFSPDEEKLIVELHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 144
                                799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5344395IPR017930Myb domain
SuperFamilySSF466893.74E-3045142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-234598IPR009057Homeodomain-like
SMARTSM007174.8E-144797IPR001005SANT/Myb domain
PfamPF002494.2E-154895IPR001005SANT/Myb domain
CDDcd001671.34E-105095No hitNo description
PROSITE profilePS5129424.30196150IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2499149IPR009057Homeodomain-like
SMARTSM007172.2E-15100148IPR001005SANT/Myb domain
PfamPF002499.6E-15101144IPR001005SANT/Myb domain
CDDcd001673.82E-11103144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEHMNNIGDG VNDENGLFCI MERGSGGGGE GAGGCGSGGG GDEVSLKKGP WTTAEDAILI  60
DYVTKHGEGN WNAVKRNTGL NRCGKSCRLR WANHLRPNLK KGAFSPDEEK LIVELHAQFG  120
NKWARMAALL PGRTDNEIKN YWNTRIKRRQ RQGLPLYSDE HNHVNTPTTP TTPASPCVTP  180
NGSNPHNITT KFEFFNQNQH QYQQQHHHHL PLSPTSTHHH SPLSSPLQHR QQHQQQSYSP  240
HTFLDTSPTP LSSSSPLSFT FQRPAPLLSA PLRLKRFRSS PNFSLQVPNS MTQNCSSSLH  300
DPSLTSHHDS SFRFPIHYNA SFPQYFHTPL LESDRGVSSS SSPFSTKLEL PSNQYSRLSS  360
EQDIKTNNVE FNNDLNSLQN NSSGLMGDLL MDAQTLACEQ NSKKRNYLSL NEGSDMYNGC  420
QSYDDFPLST LYWSSNSEQK PKEEAQDLTK FMNDDMSTML SVMPSSTMQN QDWNNNTNIK  480
NGSDQVSNIV QSSSGVNLAD ENFGLDIKPI ASLFPLTNTT DHNDENNDCY TWDNLPGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29461495107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600125.10.0transcription factor MYB97
TrEMBLG7IY340.0G7IY34_MEDTR; Myb-like DNA-binding domain protein
STRINGAES703760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-66myb domain protein 101