PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34882
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 274aa    MW: 31884.5 Da    PI: 9.5715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34882genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019108131123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                +kC++C+k+F    nL +H  + H
  Tp57577_TGAC_v2_mRNA34882 108 WKCGYCKKTFYEEKNLDQHFDNrH 131
                                58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1050.107.5E-495133IPR026939At2g23090-like
PROSITE profilePS501579.182108133IPR007087Zinc finger, C2H2
PROSITE patternPS000280110131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNKIFVWYHR VVVFLLLTRV SLTSPLPHTD NGQVDSNAAR NLNQEQGDHQ IHCSRERSRI  60
AWKIIQEYLT PFVEKEKYNI SRKCRLHPDN DIYRDQEQHK SHIDINEWKC GYCKKTFYEE  120
KNLDQHFDNR HSNLLNLNES KCLADICGAL HCDHEINSGS KKSKCNPAAA ARNKHLCETL  180
ADSCFPVSHG PAASRLHEFF LHQFCNAHSC TGSKPFSRGR RKKTNVFYIV ASIFLVTLLL  240
LYYLYIYLYQ RGLKRETQML KRISQAGRKK KPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1485230.0BT148523.1 Medicago truncatula clone JCVI-FLMt-15E10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459813.10.0uncharacterized protein LOC25488961
TrEMBLA0A072UVJ31e-180A0A072UVJ3_MEDTR; Putative transcription factor C2H2 family
STRINGGLYMA18G10750.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-104C2H2-like zinc finger protein