PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34720
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ZF-HD
Protein Properties Length: 345aa    MW: 38625.1 Da    PI: 8.5987
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34720genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.15e-3479136359
                ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                +v+YkeClkNhAa+lGgha+DGCgEfm++++++ +++++lkCaACgCHRnFHRre+ee
  Tp57577_TGAC_v2_mRNA34720  79 TVTYKECLKNHAANLGGHALDGCGEFMTAPTATsADPTSLKCAACGCHRNFHRREPEE 136
                                799**************************9999899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-1880136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.7E-2880134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-3081133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.73382133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.55E-19202271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-29205271IPR009057Homeodomain-like
TIGRFAMsTIGR015659.6E-26210267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLTPNPTIT PTPTTIPTTI VTTTPTTTLT KSPEHETSTP TKITTLTTPK ISPFSNGVLK  60
RHNPNYHHHH NNHHHHQVTV TYKECLKNHA ANLGGHALDG CGEFMTAPTA TSADPTSLKC  120
AACGCHRNFH RREPEEPPLS TTTHVIEYQP HHRHQPLPPP PFSNRSPNSS SPPPISSTYY  180
PSAPHMLLAL STALPENVSG PMISPGSHTR KRFRTKFTQD QKDKMLKFAE KVGWKMQKKD  240
DEFTHEFCNE IGVDRSVLKV WMHNNKNTFS KRENINNNNN INNINNNNEI NVVGVKSFLP  300
YEDEEHNKMK NNINKDDMNV EIHNLNHYQN DGGVVVRANG SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-222092681675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491795.11e-143zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-67ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2K3PRP31e-170A0A2K3PRP3_TRIPR; Transcription factor HB29-like protein
STRINGXP_004491795.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-55homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]