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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YC | ||||||||
Protein Properties | Length: 89aa MW: 9525.23 Da PI: 7.3595 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 25.8 | 2.3e-08 | 41 | 74 | 66 | 99 |
NF-YC 66 aeenkrrtlkksdiaaavtrtdifdflvdivprd 99 a + krrtl+k dia+av tdifdfl+ v ++ Tp57577_TGAC_v2_mRNA34249 41 AIDGKRRTLNKEDIASAVIATDIFDFLITLVSNS 74 5689************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.26E-7 | 15 | 67 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.7E-7 | 40 | 72 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MRQAGAYSNL LCGGISGRTG PHSLPLARIK KIXXXXXXXM AIDGKRRTLN KEDIASAVIA 60 TDIFDFLITL VSNSDATDDA TVIQMETI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34249 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136138 | 3e-52 | AC136138.30 Medicago truncatula clone mth2-8f9, complete sequence. | |||
GenBank | JQ918298 | 3e-52 | JQ918298.1 Medicago truncatula nuclear transcription factor Y subunit C6 (NF-YC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596534.1 | 3e-37 | nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2K3LAA6 | 2e-44 | A0A2K3LAA6_TRIPR; Nuclear transcription factor Y subunit C-3-like protein | ||||
STRING | AES66785 | 1e-36 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-10 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34249 |