PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34127

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 188aa MW: 21279 Da PI: 8.6122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34127	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	7	28	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C+k Fs+ L H++ H Tp57577_TGAC_v2_mRNA34127 7 VCPICDKLFSNGKALGGHMKAH 28 6******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.32E-5	3	33	No hit	No description
PROSITE profile	PS50157	10.055	6	33	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-8	7	30	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MENKGRVCPI CDKLFSNGKA LGGHMKAHLA KLPLPPKPSM ESTKHSTHFN ARSDPIPNLR 60 SLKRNFCYAL ANSGGNSTFE FYPKIPTGKR SKRQRKQFIV AEEKEDITQS NEAKENAENT 120 QCKIVYNNTD LELAETIVFM NRKEWQQINE KYLGEEVGRS GNEDVELDQV REEHMKVYFS 180 GPVVSNS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34127

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516354.1	1e-50	zinc finger protein ZAT1-like
TrEMBL	A0A2K3P594	1e-138	A0A2K3P594_TRIPR; Zinc finger protein ZAT1-like
STRING	XP_004516354.1	5e-50	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17314	5	7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34127