PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bZIP | ||||||||
Protein Properties | Length: 361aa MW: 40734.4 Da PI: 7.728 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.9 | 1.7e-11 | 66 | 95 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k+ rr+++NReAAr+sR+RKka++++Le+ Tp57577_TGAC_v2_mRNA34043 66 SKVLRRLAQNREAARKSRLRKKAYVQQLET 95 5899************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.4E-8 | 59 | 114 | No hit | No description |
SMART | SM00338 | 6.2E-8 | 63 | 123 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-8 | 67 | 96 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.71E-7 | 67 | 103 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 70 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.7E-26 | 157 | 230 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDIYEPLQQV SMWGDSFKVE GGLNSIASPM LLVNTTTSME NKSEYIPHEP SEPSEVNQET 60 TNKDVSKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL MQLELEIGRA RKQLQGMCTG 120 NALDTTFMGS PETINPGIVA FEIEYGNWVD ENHRRNEELR NVFQANASEV QLGQVVQNVL 180 SHYTDLFRLK AEAAKSDVLY LISGVWKPSV ERLFLWIGGA RPSQLLNLIV PQLDPLTEQQ 240 LASIKKLHLS SQQAEDALSQ GLEKLQQSLV QDMAVDPFSA TNHGFQMAIA IRKFEALESF 300 VSQADHLRRE TLIYMSRILS THQAARGLIA LGEYFHRLRT LGSRWTSRPC DSVISPRITP 360 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34043 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515651.1 | 0.0 | transcription factor TGA3-like isoform X1 | ||||
Refseq | XP_004515652.1 | 0.0 | transcription factor TGA3-like isoform X1 | ||||
Swissprot | Q39162 | 1e-121 | TGA4_ARATH; Transcription factor TGA4 | ||||
TrEMBL | A0A2K3PBI3 | 0.0 | A0A2K3PBI3_TRIPR; Transcription factor TGA4 | ||||
STRING | XP_004515651.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-123 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34043 |
Publications ? help Back to Top | |||
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