PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33899
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 339aa    MW: 38831.7 Da    PI: 4.9678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33899genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.82.9e-42111391127
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lp+GfrF+Ptdeelv++yLk+k+ g++  +++v++evd++k+eP +Lp    +k+ + ew+f s+ d kya++kr nratk g+
  Tp57577_TGAC_v2_mRNA33899  11 LPVGFRFRPTDEELVNHYLKNKLLGNDYIVNNVLAEVDVCKFEPCELPaVsVIKSVDPEWFFLSPCDYKYAKSKRFNRATKFGF 94 
                                79*************************999899***************5346777778************************** PP

                        NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                Wkatg d++++ + +++ +g+kktLv+y+gr p  +k++Wv+hey+
  Tp57577_TGAC_v2_mRNA33899  95 WKATGIDRKIKIRgTNKIIGIKKTLVYYHGRIPG-VKSNWVIHEYH 139
                                ***********9966777**********999986.9*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-458158IPR003441NAC domain
PROSITE profilePS5100547.55811158IPR003441NAC domain
PfamPF023651.2E-2312139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTTSLPILNF LPVGFRFRPT DEELVNHYLK NKLLGNDYIV NNVLAEVDVC KFEPCELPAV  60
SVIKSVDPEW FFLSPCDYKY AKSKRFNRAT KFGFWKATGI DRKIKIRGTN KIIGIKKTLV  120
YYHGRIPGVK SNWVIHEYHD VTLEENKRNF VLCRLMRKAE TKAEEEADIM IYDEGEPSRN  180
LSSSDHENQE TVEGIPDVIS GTLQEINKQS IFQAPYQAEN YYPFSTQQSS ISENEPEVLI  240
PNLQLHNAYF RNVNTVDQSP FKTPEEEDTF VNSMLTDGEY IASEKRKHTF INSPVRSESL  300
RMAYYESSDT DAEVVSTPYG SIMDTSMASL QYLSPGEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-341116117168NO APICAL MERISTEM PROTEIN
1ut4_B4e-341116117168NO APICAL MERISTEM PROTEIN
1ut7_A4e-341116117168NO APICAL MERISTEM PROTEIN
1ut7_B4e-341116117168NO APICAL MERISTEM PROTEIN
4dul_A4e-341116117168NAC domain-containing protein 19
4dul_B4e-341116117168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574126.21e-168LOW QUALITY PROTEIN: NAC domain-containing protein 69-like
TrEMBLA0A2Z6MMN30.0A0A2Z6MMN3_TRISU; Uncharacterized protein
STRINGAES844641e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-55NAC domain containing protein 69