PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33836
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 785aa    MW: 90481.3 Da    PI: 6.978
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33836genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.13.2e-1457142191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                ++Y++Y++++GF v+k++sk+  ++g  +  t+ Cs+  k  +++k+     ++++ t+t+Cka+l+     dg+  +++++le
  Tp57577_TGAC_v2_mRNA33836  57 EYYKRYGQSMGFGVTKRSSKNG-DDG-KKYFTLACSRGTKYVSKSKN---LLKPNPITKTQCKARLNGCIGLDGTVTISRIVLE 135
                                69*************9998877.444.6889******9999998888...999**************99999************ PP

                       FAR1  85 HnHelap 91 
                                HnH+l+p
  Tp57577_TGAC_v2_mRNA33836 136 HNHDLSP 142
                                ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1157142IPR004330FAR1 DNA binding domain
PfamPF105511.3E-39262356IPR018289MULE transposase domain
PROSITE profilePS509669.409547583IPR007527Zinc finger, SWIM-type
PfamPF044345.1E-5549579IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MSLGPKRIVE EVVVSSDGEE INEENNTCED SLEANIVHEG EKPHVGMIFS SIDELTEYYK  60
RYGQSMGFGV TKRSSKNGDD GKKYFTLACS RGTKYVSKSK NLLKPNPITK TQCKARLNGC  120
IGLDGTVTIS RIVLEHNHDL SPTKARYFRS SKKLEPHLKK RLKLNDQAGI NVSRNFRSLV  180
IEAGGYDNLT FGEKDCRNYI DKVRRLRLGT EDADAIQNYF VRMQKQNSQF YYVVDIDDNS  240
RLRNVFWVDA RCRAAYEYFG EVATFDTTYL TNKYDMPFAP FVGVNHHGQS VLLGCALLSN  300
EDTETFTWLF STWLDSMHGR TPNAIITDQD KAMKNAIEVV FPKARHRWCL WHIMKKVPEK  360
LGRRSDYESI KKLLHDVVYD SLSKSDFMEK WEKMIEDFKL QDNEWLKGLF DERNRWVPVF  420
LRDTFWAGMS TTQRSESMNS FFDGYVNSKT TLKQFVEQYD NALRDKIEKE NLADFGLFNT  480
SIACLSHYGF ESQFQKAFTN AKFKEFQDEV AAMIHCHTFI ERLDGLNSIY SVIESKKKFD  540
KINDILFKVS FNEKDFEIQC MCCLFQFKGI LCRHILCVLK LTGKTESIPS YYIFSQWRKD  600
IRRRHTHIKC GFDHFVGNVE LQRVDKACAA FYEVASKVIN SDHDFLKMMN WIKDIKDEFA  660
SKETSPANIV EEDGSEQNQV TKILDPNLCS SRVQESVQVI DGIDTRESIQ CEQSSFGWNG  720
QGGINNLAPF NPNSVLISQV NQVPFYSQVM NHGVSYFELL QAQHHVNDPS SSTPRESYRG  780
EVND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626806.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2Z6P9Q30.0A0A2Z6P9Q3_TRISU; Uncharacterized protein
STRINGXP_004496070.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-124FAR1 family protein