![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA33308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26079.6 Da PI: 6.1242 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + ++r++lg+f+taeeAa+a++ a+++l+g Tp57577_TGAC_v2_mRNA33308 41 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDTAEEAARAYDTAARNLRG 91 68********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-14 | 41 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-31 | 41 | 99 | No hit | No description |
SMART | SM00380 | 3.8E-36 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 42 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 42 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.263 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
LFHTSNLVEX XXXXXXXXXX XXXAAAAAAA AAAEPGFFKE PRYRGVRKRP WGRFAAEIRD 60 PLKKARVWLG TFDTAEEAAR AYDTAARNLR GPKAKTNFPL AQPFYHNIDA GDPFSDQRFY 120 AGAGVVAGDG FQDHRRPTSS GMSSTVESFS GPRPIGLPAP PSIVAGRRYP RTPPVAPEDC 180 RSDCDSSSSV VDDGDGDNVA SSTMLSFKRQ PLPFDLNAPP LDDADVANYG GEDLHCTLLC 240 L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 39 | 100 | 2 | 64 | ATERF1 |
3gcc_A | 3e-21 | 39 | 100 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA33308 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513889.1 | 1e-120 | ethylene-responsive transcription factor 7-like | ||||
Swissprot | Q9LDE4 | 4e-55 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A2K3LBC4 | 1e-156 | A0A2K3LBC4_TRIPR; Ethylene-responsive transcription factor 3-like protein | ||||
STRING | XP_004513889.1 | 1e-119 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20310.1 | 2e-44 | ethylene response factor 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA33308 |
Publications ? help Back to Top | |||
---|---|---|---|
|