PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33270
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 177aa    MW: 19797.5 Da    PI: 8.7191
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.21.8e-135397549
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                               ++ +r+++NRe+ArrsR+RK++ ++ L+  v +L +eN++    +
  Tp57577_TGAC_v2_mRNA33270 53 RKRKRMISNRESARRSRLRKQKHLDDLAVQVSQLRNENQQILTSV 97
                               6789**********************************9877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.3E-1749113IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.55351114IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1052128No hitNo description
PfamPF001704.0E-115395IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-1253104No hitNo description
CDDcd147021.48E-1954104No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
LFLCSVSSVL CSVSATTKLS LSHMASSSGT SSGYSTLPNS GSEGDLMLLM DQRKRKRMIS  60
NRESARRSRL RKQKHLDDLA VQVSQLRNEN QQILTSVNLT TQRFLAVESE NSVLRAQLSE  120
LNNRFESLNE IINFMNVTNG VFEPVVDNNN NYFIPLNMAY LNQPIMASAD MNMVHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15273RKRKRMISNRESARRSRLRKQK
26571RRSRLRK
36572RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1407221e-160AC140722.11 Medicago truncatula clone mth2-14e20, complete sequence.
GenBankCU0248751e-160CU024875.13 M.truncatula DNA sequence from clone MTH2-116J14 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603971.25e-82bZIP transcription factor 11
SwissprotC0Z2L55e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2K3MPU75e-85A0A2K3MPU7_TRIPR; Ocs element-binding factor 1-like protein
STRINGAES742221e-83(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.17e-45basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]