PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32997

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GeBP

Protein Properties

Length: 363aa MW: 41251.8 Da PI: 10.0223

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32997	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	67.1	3.8e-21	11	105	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 ++r++s +Dei+lL Gl++ k+k+g +p + ++++y++ k s s k + k+ql++Ki +LKkK++++ + k++ + f +h Tp57577_TGAC_v2_mRNA32997 11 PKRIFSRNDEIILLNGLLQIKSKRGIDPAKILSKVYSTHKYSFSNKtIRKRQLSDKIHKLKKKYQENLTM-KEQGSLIFIDTHK 93 79**************************************997626799**************9.77777899999 PP DUF573 86 qkifelskkiWg 97 +k fels+ +Wg Tp57577_TGAC_v2_mRNA32997 94 EKLFELSNELWG 105 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.1E-19	12	105	IPR007592	Protein of unknown function DUF573
SuperFamily	SSF53474	1.6E-6	312	362	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	8.5E-10	313	362	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF00450	5.4E-7	320	362	IPR001563	Peptidase S10, serine carboxypeptidase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0004185	Molecular Function	serine-type carboxypeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAKNKKQTVK PKRIFSRNDE IILLNGLLQI KSKRGIDPAK ILSKVYSTHK YSFSNKTIRK 60 RQLSDKIHKL KKKYQENLTM KEQGSLIFID THKEKLFELS NELWGVENGA VDRETGADDG 120 EHGDDNMHMN LLKRAEMDRR CLELKVQEDK LRLQRSLLLK EQVDLIYKSL LESSESRTSL 180 LIASRVWSSL APSRADLLLW CYPEDGPSIL SDAWIAVESS RSLNVGSTWE WKSINSSPNV 240 SIEKASKAGL RAMLPLTPLG SLPLLGCIND FIGRNHSLCL LPPLPLFQVN SAPLIILEPT 300 LSRSRHRVLI SEPDRVRNLP GQPKVRFHQY SGFISVDDVQ KRKLFYYFVE ALLNPASEPI 360 VL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAKNKKQTVK PKRIFSRNDE IILLNGLLQI KSKRGIDPAK ILSKVYSTHK YSFSNKTIRK  60
RQLSDKIHKL KKKYQENLTM KEQGSLIFID THKEKLFELS NELWGVENGA VDRETGADDG  120
EHGDDNMHMN LLKRAEMDRR CLELKVQEDK LRLQRSLLLK EQVDLIYKSL LESSESRTSL  180
LIASRVWSSL APSRADLLLW CYPEDGPSIL SDAWIAVESS RSLNVGSTWE WKSINSSPNV  240
SIEKASKAGL RAMLPLTPLG SLPLLGCIND FIGRNHSLCL LPPLPLFQVN SAPLIILEPT  300
LSRSRHRVLI SEPDRVRNLP GQPKVRFHQY SGFISVDDVQ KRKLFYYFVE ALLNPASEPI  360
VL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32997

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	4e-10	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32997