PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 114aa MW: 12948.6 Da PI: 4.6665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 23.5 | 1.5e-07 | 60 | 114 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLp 48 lp+G++F+P+d e++ ++L++kv ++ ++++ +++ +i++++P++Lp Tp57577_TGAC_v2_mRNA32941 60 LPAGVKFDPNDIEIL-QHLEAKVMSDVCKIHPlidefipTLEGEnGICYTHPEKLP 114 799***********9.99*******996653333333322333336********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-7 | 55 | 114 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.99 | 60 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MTWRNDSNHE EDELITPSKD NNNNKTHMKL NEEIQIIKCP SCDHNIEVKD KGGIHDLPGL 60 PAGVKFDPND IEILQHLEAK VMSDVCKIHP LIDEFIPTLE GENGICYTHP EKLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32941 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027931119.1 | 6e-52 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 3e-35 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2Z6MK24 | 4e-66 | A0A2Z6MK24_TRISU; Uncharacterized protein | ||||
STRING | GLYMA13G30800.4 | 9e-50 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17526 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-37 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32941 |
Publications ? help Back to Top | |||
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