PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32613
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 482aa    MW: 54848.3 Da    PI: 7.605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32613genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05273296123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                y C +C  +F++k +L++H r  H
  Tp57577_TGAC_v2_mRNA32613 273 YACAICLDTFTNKQTLESHVRErH 296
                                89*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.033273296IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743273296IPR007087Zinc finger, C2H2
PROSITE patternPS000280275296IPR007087Zinc finger, C2H2
SMARTSM003556.1307330IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85307335IPR007087Zinc finger, C2H2
PROSITE patternPS000280309330IPR007087Zinc finger, C2H2
SMARTSM003550.35373396IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12373401IPR007087Zinc finger, C2H2
PROSITE patternPS000280375396IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEKLICMENS QYDIMKLDDE SSDDSLLVMQ VPAQVENQVQ LQENENDNDN VNVNGLAIQI  60
FEEPDTTDRQ CRAYIEAKGR QCARKAIRNN IYCCSHFSSK KGKSVHVRTP LCGGITIAGA  120
RCKHRSLYGR AFCKKHLHNV EKGQTSNSKC RIRTRTRTLK RKYEENCTDM VLVHPEIPLE  180
INPVSVINRD DSFSARNIIG ETLMLSGTDR NEIKALQWIG SPSHGNDHTE DSXXXXXXXX  240
XXXXXXXXSN DKTLGNHWME NHEKEAQWLF RSYACAICLD TFTNKQTLES HVRERHRVQF  300
FDHYILLICI PCGRDFENMD ELWLHVMSAH PAELKLPKAP AQLTFSTGXX XIEQGNEASL  360
NNNSMIPSGS QKLVCRFCGL KFDLISDLNR HREAVHMEHN LPSWVEASNR FGRRARSNSN  420
RRSHAKKTEP QPNNSLDILS LTACAECCQD NLEASLKEKY GYLPARLNLK ATKLCIELAS  480
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628860.11e-137histone-lysine N-methyltransferase SUVR5
TrEMBLA0A2K3LL650.0A0A2K3LL65_TRIPR; Histone-lysine N-methyltransferase SUVR5-like protein
STRINGAES843981e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2800222