PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32549

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 196aa MW: 22722.1 Da PI: 4.6499

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32549	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.9	2.3e-37	10	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW Tp57577_TGAC_v2_mRNA32549 10 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRT--------QNRMTNNGYWM 84 79***********************999.99***********77778899**984........589**** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +++vl++ +++ vg+kk vf+ g+ap+g+kt+W+m+eyrl Tp57577_TGAC_v2_mRNA32549 85 PMGMEEQVLTSsSNKRVGMKKYYVFHIGEAPDGNKTNWIMQEYRL 129 ****99867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-48	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	45.847	10	161	IPR003441	NAC domain
Pfam	PF02365	1.9E-22	11	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDHNNNVNL PPGFRFYPTD EELVVHFLHR KASLLPCHPD VIPDLDLYPF DPWQLQGRAL 60 EEGNQWYYYS RRTQNRMTNN GYWMPMGMEE QVLTSSSNKR VGMKKYYVFH IGEAPDGNKT 120 NWIMQEYRLS DSASSSTRSS SSKRKSKSEH SRWVICRVYE HDEDDDDQDG DGTELSCLDE 180 VFLSLEDLDE VSLPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-41	3	160	10	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-41	3	160	10	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-41	3	160	10	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-41	3	160	10	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	3	161	13	168	NAC domain-containing protein 19
3swm_B	2e-41	3	161	13	168	NAC domain-containing protein 19
3swm_C	2e-41	3	161	13	168	NAC domain-containing protein 19
3swm_D	2e-41	3	161	13	168	NAC domain-containing protein 19
3swp_A	2e-41	3	161	13	168	NAC domain-containing protein 19
3swp_B	2e-41	3	161	13	168	NAC domain-containing protein 19
3swp_C	2e-41	3	161	13	168	NAC domain-containing protein 19
3swp_D	2e-41	3	161	13	168	NAC domain-containing protein 19
4dul_A	2e-41	3	160	10	164	NAC domain-containing protein 19
4dul_B	2e-41	3	160	10	164	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32549

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457220.1	1e-111	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-83	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2K3PI01	1e-145	A0A2K3PI01_TRIPR; NAC domain-containing protein
STRING	GLYMA08G08010.1	1e-108	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-76	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32549

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]