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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 17011.3 Da PI: 8.6538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 32 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++ AeIrdp++ r +lg+f++aeeAa+a++ a+ +l+g+ Tp57577_TGAC_v2_mRNA32535 32 RYRGVRRRP-WGKFGAEIRDPTKpT---GRQWLGTFDSAEEAARAYDCAAIRLRGA 83 6********.**********97744...688**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.762 | 32 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-30 | 32 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 32 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 32 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.82E-29 | 32 | 91 | No hit | No description |
Pfam | PF00847 | 3.6E-11 | 32 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MLLKKVQLKK LTKILSLREM EEANKKGDEE VRYRGVRRRP WGKFGAEIRD PTKPTGRQWL 60 GTFDSAEEAA RAYDCAAIRL RGALAILNFP DEYYFHLSSL LSSSSSSTCA IASTSSTQHK 120 EVIEFEYLDN KVLEDLLASS KEENEKKNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-31 | 27 | 147 | 9 | 129 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32535 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463356.1 | 3e-70 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 8e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2Z6NUV4 | 3e-80 | A0A2Z6NUV4_TRISU; Uncharacterized protein | ||||
STRING | XP_004487930.1 | 8e-61 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32535 |
Publications ? help Back to Top | |||
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