PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3242
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 402aa    MW: 44897.3 Da    PI: 6.1964
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-083443772154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp++e++++L +++gL+ +q+ +WF N+R +
  Tp57577_TGAC_v2_mRNA3242 344 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 377
                               469*****************************87 PP
2ELK28.92.6e-10298319122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELKh+L+++Y+++++++++E++
  Tp57577_TGAC_v2_mRNA3242 298 ELKHELKQGYKEKIVDIREEIL 319
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-20130174IPR005540KNOX1
PfamPF037904.7E-18132173IPR005540KNOX1
SMARTSM012563.5E-26183239IPR005541KNOX2
PfamPF037918.2E-19190238IPR005541KNOX2
SMARTSM011886.1E-4298319IPR005539ELK domain
PfamPF037899.2E-7298319IPR005539ELK domain
PROSITE profilePS512139.969298318IPR005539ELK domain
PROSITE profilePS5007111.742318381IPR001356Homeobox domain
SuperFamilySSF466893.68E-16320384IPR009057Homeodomain-like
SMARTSM003896.5E-11320385IPR001356Homeobox domain
CDDcd000865.43E-12321382No hitNo description
Gene3DG3DSA:1.10.10.606.5E-25325382IPR009057Homeodomain-like
PfamPF059201.1E-17338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
LSRLGSVEVG EGECHITVTL WLITTKTTHS IISQNNNNNN NNQPPILTTL SKQHLIGSTT  60
LFFETSKPTS TLQQQPQQTT VPISSTLTQL ALLLAPNPPX VIDNIAGDGL KTTESGETAA  120
EEGVMNWQKA KYKGEIMAHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA ESQNVVAKYS  180
AFGQGMLDDD NKQLDHFMSH YVLLLCSFKE QLQQHVRVHA MEAVMACWEI EQSLQSLTGV  240
SPGEGTGATM SEDEDEQVDS DVNLFDGGMD GSDNSMGGFG PLVLTENERS LMERVRHELK  300
HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKDWWQ SHSKWPYPTE EDKARLVQET  360
GLQLKQINNW FINQRKRNWH SNPSTSNVLK SKRKRKSNAG D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374395RKRNWHSNPSTSNVLKSKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280600.0EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634929.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-174KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2K3PJ300.0A0A2K3PJ30_TRIPR; Homeobox protein knotted-1-like 3-like
STRINGAES735810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-154KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]