PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31991
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 572aa    MW: 65912.9 Da    PI: 6.2246
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31991genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.94.7e-17102181284
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfd 83 
                                Wt++evlaL+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++ + +i++++++++  ++  +++++ +
  Tp57577_TGAC_v2_mRNA31991 102 WTNDEVLALLKIRSSMENWFPDF-----TWEHVSRKLEEVGYKRSAEKCKEKFEEESRFFNNINNNQNQNQnpNNFGKNFRFVT 180
                                ********************998.....9***********************************99998862234445555555 PP

                   trihelix  84 q 84 
                                +
  Tp57577_TGAC_v2_mRNA31991 181 E 181
                                5 PP
2trihelix94.41.1e-29427514186
                   trihelix   1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                rW+k+evlaLi++r +++++ ++++    k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ ++kr s +s+tcpy
  Tp57577_TGAC_v2_mRNA31991 427 RWPKDEVLALINLRCNTNNEEKEANninNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKR-SLDSRTCPY 509
                                8**************99999888743449********************************************8.9999***** PP

                   trihelix  82 fdqle 86 
                                f+ l 
  Tp57577_TGAC_v2_mRNA31991 510 FHLLS 514
                                **875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-12100184No hitNo description
PROSITE profilePS500906.423101153IPR017877Myb-like domain
PfamPF138371.2E-18426514No hitNo description
CDDcd122034.38E-23426494No hitNo description
PROSITE profilePS500906.76427487IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSSS SLPLHLPFPL STPNNNTFPT FDPYNQQLPL QVQPNNLLHP  60
LHHHKNDEHK QQNNTTSTPS MNNFQIDERD QRQILPQLID PWTNDEVLAL LKIRSSMENW  120
FPDFTWEHVS RKLEEVGYKR SAEKCKEKFE EESRFFNNIN NNQNQNQNPN NFGKNFRFVT  180
ELEELYQGGG ENNSNQVGTQ KPNNVQDKMD RGEDSRNDDV LVTKKSEDEV FDKSTTNEER  240
KRKRGDNRFE VFKGFCESVV KKMMDQQEEM HNKLIEDMIK RDEEKFSREE AWKKQEMEKM  300
NKELELMAQE QAVAGDRQAN IIQFLNKFTT STNSSTSLAL IASSIQTFGI GKQDKSKVTS  360
NSSTLHSQNP NLENHDKTLQ PNPENPNSGN PSSTTTITTT TTALAITPHK NNAISSYSGE  420
KEDIGRRWPK DEVLALINLR CNTNNEEKEA NNINNKAPLW ERISQGMLEL GYKRSAKRCK  480
EKWENINKYF RKTKDANRKR SLDSRTCPYF HLLSNLYNQG KLVLQSDQKQ ESNNNNMNVA  540
EENVQEQATQ DEKQGGESSQ VGPAFAGDFT M*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355651e-148AC135565.18 Medicago truncatula clone mth2-19b12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591003.10.0trihelix transcription factor GTL2
TrEMBLG7I6V90.0G7I6V9_MEDTR; Putative transcription factor MYB family
STRINGAES612540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-84Trihelix family protein