PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31725
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 1316aa    MW: 148524 Da    PI: 7.6971
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31725genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31253309259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +DgynWrKYGqK+v+gse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh 
  Tp57577_TGAC_v2_mRNA31725 253 EDGYNWRKYGQKQVRGSEYPRSYYKCTQSNCQVKKKVERSH-DGQITEIIYRGHHNHA 309
                                7****************************************.***************6 PP
2WRKY102.42.7e-32465523159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+++d k+v++tYeg+Hnhe
  Tp57577_TGAC_v2_mRNA31725 465 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSDGCNVRKHVERASHDLKYVITTYEGKHNHE 523
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-27239311IPR003657WRKY domain
PROSITE profilePS5081123.755247311IPR003657WRKY domain
SuperFamilySSF1182905.1E-24249311IPR003657WRKY domain
SMARTSM007745.1E-34252310IPR003657WRKY domain
PfamPF031067.0E-24253308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-36450525IPR003657WRKY domain
SuperFamilySSF1182907.19E-28458525IPR003657WRKY domain
PROSITE profilePS5081138.067460525IPR003657WRKY domain
SMARTSM007741.3E-37465524IPR003657WRKY domain
PfamPF031061.6E-24466523IPR003657WRKY domain
PfamPF077274.2E-928571100IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566722.13E-278571265No hitNo description
CDDcd092729.82E-8011581297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1316 aa     Download sequence    Send to blast
MEQENKNINK SNNNNNENIN GVDEIYVSDS KGEDFFDFSP KRSIAERRGF KINTTRFRFD  60
GFGATKSLIS PTARSPCLTI PSGISPTALL DSPIMLPNSQ AMPSPTTGSF AMLPPLIDDG  120
SMLPQVNLSP NSLSPYHASL NEVSSKCRMM NEAHEDIKML VQGQQMIDFS VPRDFANNYL  180
AKNNGVHFDN DVKMVDDMFI DASNVDMPIS RTEEGSDIST LPENLIHDED IRQLLLEEEQ  240
KEMSHATRGK TSEDGYNWRK YGQKQVRGSE YPRSYYKCTQ SNCQVKKKVE RSHDGQITEI  300
IYRGHHNHAI PHSSRRGSVP SNDEMSDISE TNETCDRSDA DSIWENIQSQ EKDAKHHPDW  360
KLDGQERTSP PSSRTELSNP TKRFRSLGKY ESDEAREHYS TLANHNGDKG GATQAVLQLE  420
DDIEDAESKL KRRKKESYPG ETMVPSRAAR EPRVVVQIES EVDILDDGYR WRKYGQKVVK  480
GNPNPRSYYK CTSDGCNVRK HVERASHDLK YVITTYEGKH NHEVPTSRNN NQISSNDIAL  540
PSCGVSNISK FETLAPFDRK PYFSNEFMRP SLIGSFSNDM KFGPSTSMFQ RKYPSLNSII  600
PYGVAPQAGP IGTSHPPIYN HIKTFGCMCF ASKIPRDRNK FAARSRKCIF VGYPHGKKGW  660
RLYDIETQDF FISRDVVFYE NNFPYSQPSX XXXXXXXXXX XXXDMDYVTS TSLGEPTCSG  720
TNELLATGPI KERGSDPITS EAPANVIVDD TTCPIAPCEN NIRHSSRERQ QSVRLRDHVC  780
YTAHCLDPPS ASSAQSSSSG TPYPIANYVT YKHFSASHAR FLAAVTVGHE PRCFSEAIRD  840
PQWRDAMRKE IEALENNGTW TIEDLPPEKK AIGSKWVYKI KYNSDGTIER HKARLVVLGN  900
NQVKGIDFNE TFAPVAKMVS VRVFLAVAVV RGWELHQMDV HNAFLHGDLD EEVYMSLPPG  960
FSGASHGRVC RLRKSLYGLR QAPRNWFSKL TSALKSFGFV QSYADYSLFS YEKDNHTLHI  1020
LVYVDDLIIV GNDSNAISNF KAYLSTCFHM KDLGVLKYFL GIEVARGSEG LFLSQRKYAL  1080
DIISESGLLG AKPCDFPMEQ NHQLALATEL CYVVHTLAQF MQIPKEDHWN AALRVLRYLK  1140
GHPGQGLVLS KDSALRLTAY CDSDWATCPL TRRSITGYFI MLGSSPISWK TKKQPTVSRS  1200
SAEAEYRSMA TTSCELIWLK SLLKSLGVHH SMSMRLFCDS QAALHIAANP VYHERTKHIE  1260
IDCHFVRDQI QAGNIVTFHV RTHEQLADIF TKALGKQQFQ FLLRKLGIRN LHAPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-33253525877Probable WRKY transcription factor 4
2lex_A6e-33253525877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31725
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415202.10.0PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1
RefseqXP_017415205.10.0PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X3
TrEMBLA0A2K3MRU30.0A0A2K3MRU3_TRIPR; Retrovirus-related Pol polyprotein from transposon TNT 1-94
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-89WRKY DNA-binding protein 2