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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 33733.5 Da PI: 4.8892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.8e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f t eAa a++ a++kl+g Tp57577_TGAC_v2_mRNA31510 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDTAARKLYG 88 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.12E-31 | 38 | 98 | No hit | No description |
PROSITE profile | PS51032 | 22.155 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-34 | 39 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 39 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 39 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MMKSGMGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR 60 GARLWLGTFE TSHEAALAYD TAARKLYGAE AKLNLPELST PYVHSPKKKS SSSATITQTP 120 HMQQPQIINH KPIKTNFNFT SLNSCNNTNN NIHNHNANNN SVFVSLPSQQ IGDVAPPIYD 180 SIPIMSLPME EQIEQISLQG DDLSFQYDNS NGTVESNNDL CFQYDYSEGM MESNNQNDSF 240 FGTLNYETMP VVDDDSIWKE AAMSLDSALS MDFQIIADAD GIYNSGANFG EVGALDSLQT 300 PWCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-20 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC159535 | 1e-122 | AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence. | |||
GenBank | AC160013 | 1e-122 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589344.1 | 1e-102 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A2K3MMA2 | 0.0 | A0A2K3MMA2_TRIPR; Dehydration-responsive element-binding protein 2d-like | ||||
STRING | AES59595 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31510 |