PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23321.1 Da PI: 6.355 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 146 | 191 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L +l Pk+ +k s a+ L +AveYIk+Lq Tp57577_TGAC_v2_mRNA31464 146 SIAERVRRTRISERIKKLESLFPKS----DKQTSTADLLDLAVEYIKDLQ 191 689*********************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.903 | 140 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-15 | 142 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-10 | 144 | 195 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 145 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 146 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-10 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
LRELGSFKAN EVSNGTLNFS SRPRMPQIAE NGVQSIEANC DQTTNLVNEN GNSKCHIPSF 60 TNEFWDNSSF NAQKTEIEDE IMFSTSNGLE SQEPDFCYQN LGLTHHLSLP SSSTKISSSM 120 EKFLQVQGSV PCKIRAKRGF ATHPRSIAER VRRTRISERI KKLESLFPKS DKQTSTADLL 180 DLAVEYIKDL QEQVQVLENY YIPCHI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003599090.2 | 1e-115 | transcription factor bHLH130 | ||||
Refseq | XP_013459160.1 | 1e-115 | transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 1e-40 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A2K3MVP5 | 1e-132 | A0A2K3MVP5_TRIPR; Transcription factor bHLH130-like protein (Fragment) | ||||
STRING | AES69341 | 1e-114 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4005 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31464 |
Publications ? help Back to Top | |||
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