PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31298
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 529aa    MW: 60386.6 Da    PI: 7.1524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31298genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.91.3e-30154245187
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v
  Tp57577_TGAC_v2_mRNA31298 154 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIV 237
                                89***************************955567889********************************************** PP

                                EEEE-.SS CS
                         B3  81 vFkld.gr 87 
                                 F++  g+
  Tp57577_TGAC_v2_mRNA31298 238 SFQRGvGE 245
                                ***43243 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-41144259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29150256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-25152241No hitNo description
SMARTSM010197.4E-24154259IPR003340B3 DNA binding domain
PROSITE profilePS5086314.001154259IPR003340B3 DNA binding domain
PfamPF023627.3E-28154256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MELMQEVKDY SHEELEEEED EEINTRTKEE EESNSKQQLQ HCPFSPSPSN FSLSSSSPST  60
THHHHHHHHH NQNQWLGINQ SPESHNSSSR GLGFLHQDAT TSNFTNQTNL KQIDFMELSL  120
GTNKDPSSSN TNQQEQEHQQ QQQQPSTHEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF  180
PLDSTSNEKG LLLNFEDRNG KLWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ  240
RGVGELFRHR LFIDWKRRSN HHNLDPSSST LFTPFFLPNQ QQYSIRWGGG ANSRFYSLPY  300
PSPPQSLQQH HHHQQQNHHH HHHHDPMSYN YQMYPFHQHG GGNVGNVNHQ YNFHHQQHDP  360
SSVFYMRSLA SSSSSPSSMV DQGSLTRHQQ GGGGGGGGVG RGNASNMIID SVPVSHHHQH  420
YHHQHQLGGF SSSGNITTNT TTSTINGAAK RLRLFGVNME CGSSTNHDSI PSSSSSTSIV  480
PSLQHLRLPH HEETLSTSST RFEEDKRREA SMIFGLDPSL QYHNYQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-621492583113B3 domain-containing transcription factor NGA1
5os9_B5e-621492583113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6913901e-130EF691390.1 Trifolium repens clone CloverSSR-4_G01_002_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628015.10.0B3 domain-containing protein Os02g0683500 isoform X1
RefseqXP_024628016.10.0B3 domain-containing protein Os02g0683500 isoform X1
TrEMBLA0A2K3M0N70.0A0A2K3M0N7_TRIPR; B3 domain-containing transcription factor nga1-like protein
STRINGAES850000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-62B3 family protein