PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19458.5 Da PI: 8.1271 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.3e-43 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+CakdC+++pyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar++dPvyG+vg i+ lq Tp57577_TGAC_v2_mRNA31188 38 PCASCKLLRRRCAKDCIFSPYFPSNDPQKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQ 121 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +q++ l+ +la++++e Tp57577_TGAC_v2_mRNA31188 122 NQVSDLQMQLAVAQAE 137 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.559 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-43 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
LDYKYRLSHF TTPILLLFVS SPVSSVFHYQ MGGNTNSPCA SCKLLRRRCA KDCIFSPYFP 60 SNDPQKFAIV HKVFGASNVS KMLQELPIQQ RSDAVSSLVY EAHARVKDPV YGCVGAISYL 120 QNQVSDLQMQ LAVAQAEILC LQMQHEPVMQ NPDIALDHKY QTLFTLFTLF TF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-48 | 34 | 139 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-48 | 34 | 139 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31188 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR378662 | 8e-67 | CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600972.1 | 4e-81 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-72 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K3MS69 | 4e-91 | A0A2K3MS69_TRIPR; LOB domain-containing protein 12-like | ||||
STRING | AES71223 | 1e-80 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 8e-74 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31188 |
Publications ? help Back to Top | |||
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