PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31163
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 513aa    MW: 56277.1 Da    PI: 7.8463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31163genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10146170226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                +++ C +++ t tCk+G++CkF H+
  Tp57577_TGAC_v2_mRNA31163 146 GEKDCAHYMLTRTCKFGESCKFDHP 170
                                7889********************8 PP
2zf-CCCH35.31.9e-11197222126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                ++++ C+ff++t  Ck+G+rCkF+H+
  Tp57577_TGAC_v2_mRNA31163 197 PGEPDCPFFLKTQKCKFGSRCKFNHP 222
                                5789*********************8 PP
3zf-CCCH38.22.5e-12239264227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++C f+++tG CkyG+ CkF+H++
  Tp57577_TGAC_v2_mRNA31163 239 QEPPCAFYLKTGKCKYGAACKFHHPK 264
                                689*********************96 PP
4zf-CCCH38.71.6e-12317341226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                +++ C+f+++tG Ck+G++C+++H+
  Tp57577_TGAC_v2_mRNA31163 317 GEVDCPFYMKTGSCKFGATCRYNHP 341
                                6899********************9 PP
5zf-CCCH37.63.6e-12404427326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                + +C+f++++G+Ck+G+rCk++H+
  Tp57577_TGAC_v2_mRNA31163 404 QIECDFYMKSGICKFGERCKYHHP 427
                                568********************8 PP
6zf-CCCH37.15.4e-12453478227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                + e+C+++++t tCk+G++CkF H+p
  Tp57577_TGAC_v2_mRNA31163 453 GVEICPYYLKTATCKFGATCKFDHPP 478
                                679*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0034144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5145171IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8146170IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812196224IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9198222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5201222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4202221IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901237265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6239265IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10239264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5242263IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-7315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446315343IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10317341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5319342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4321340IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112401429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6403429IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9405427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4407427IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5451478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953451479IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9453478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5454478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5455476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MENRIYTSNS PTNYISPTTR FYDPNTMFLA HYRRTAEAAA AASSTRYSSS LSDTDIAPPG  60
VSSRISSSST ANFLSQTNPW ANAFNNTAAN VASASLQLKR SADALYHPTI LNTYGQNEAW  120
YTTNSLAKRP RYDTGSTLPI YPQRPGEKDC AHYMLTRTCK FGESCKFDHP IWVPEGGIPD  180
WKEVPNVVPS ETLPERPGEP DCPFFLKTQK CKFGSRCKFN HPNVPSENPD VSGLPERPQE  240
PPCAFYLKTG KCKYGAACKF HHPKDIQIQF SDESSRTFEQ TQTNSSMFDG AIGDTQQIQP  300
LVSPLLHNSK GLPVRQGEVD CPFYMKTGSC KFGATCRYNH PDMNAINPPI SALAPSLLGS  360
SAANHNIGVI NPAASFYQAF DPRISNPMTQ VGVIGTIYPQ RPGQIECDFY MKSGICKFGE  420
RCKYHHPIDR STESSKLQSN VKLTAAGLPR REGVEICPYY LKTATCKFGA TCKFDHPPPG  480
EVMELAKSQG TSTTNGGETE TNVDVSGSAP EQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445292.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-173C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2Z6N0130.0A0A2Z6N013_TRISU; Uncharacterized protein
STRINGXP_004517027.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-168floral homeotic protein (HUA1)