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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 95aa MW: 10764.5 Da PI: 11.3912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ rgr++AeI+dps+ ++ ++lgkf ta eAa+a+++ + ++g Tp57577_TGAC_v2_mRNA30671 35 RYRGVRKRP-RGRFAAEIKDPSK---KACVWLGKFNTALEAARAYDEKAIMFRG 84 69*******.8*********965...6*********************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-27 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-11 | 35 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 35 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.30E-24 | 35 | 93 | No hit | No description |
SMART | SM00380 | 6.4E-25 | 35 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.783 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
LDFCGESSTR SLPNVSVADF HVRCRIFSLR TRKIRYRGVR KRPRGRFAAE IKDPSKKACV 60 WLGKFNTALE AARAYDEKAI MFRGSKAKTN FPIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 36 | 93 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-18 | 36 | 93 | 6 | 64 | ATERF1 |
3gcc_A | 8e-18 | 36 | 93 | 6 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30671 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616864.1 | 2e-25 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9ZWA2 | 6e-25 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | A0A2K3KXJ1 | 4e-62 | A0A2K3KXJ1_TRIPR; Ethylene-responsive transcription factor 4-like protein (Fragment) | ||||
STRING | AES99822 | 1e-24 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-19 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30671 |
Publications ? help Back to Top | |||
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