PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30671
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 95aa    MW: 10764.5 Da    PI: 11.3912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30671genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-173584255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               +y+GVr ++ rgr++AeI+dps+   ++ ++lgkf ta eAa+a+++ +  ++g
  Tp57577_TGAC_v2_mRNA30671 35 RYRGVRKRP-RGRFAAEIKDPSK---KACVWLGKFNTALEAARAYDEKAIMFRG 84
                               69*******.8*********965...6*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-273592IPR001471AP2/ERF domain
PfamPF008472.8E-113584IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-193593IPR016177DNA-binding domain
CDDcd000181.30E-243593No hitNo description
SMARTSM003806.4E-253594IPR001471AP2/ERF domain
PROSITE profilePS5103219.7833592IPR001471AP2/ERF domain
PRINTSPR003671.3E-93647IPR001471AP2/ERF domain
PRINTSPR003671.3E-97494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
LDFCGESSTR SLPNVSVADF HVRCRIFSLR TRKIRYRGVR KRPRGRFAAE IKDPSKKACV  60
WLGKFNTALE AARAYDEKAI MFRGSKAKTN FPIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-183693361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-183693664ATERF1
3gcc_A8e-183693664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616864.12e-25ethylene-responsive transcription factor 3
SwissprotQ9ZWA26e-25ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLA0A2K3KXJ14e-62A0A2K3KXJ1_TRIPR; Ethylene-responsive transcription factor 4-like protein (Fragment)
STRINGAES998221e-24(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-19erf domain protein 9
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]