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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA30253 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
MYB |
Protein Properties |
Length: 375aa MW: 41835.3 Da PI: 9.2931 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA30253 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 94 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
rg W + Ed +l+++v+++G+ +W++Ia+++ t+k+c++rw++
Tp57577_TGAC_v2_mRNA30253 94 RGHWRPAEDAKLKELVAEYGPQNWNLIAEHLDgrsvflILITGKSCRLRWFNQ 146
899*****************************66666633589*******996 PP
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2 | Myb_DNA-binding | 58.1 | 2e-18 | 153 | 196 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g +++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+
Tp57577_TGAC_v2_mRNA30253 153 KGTFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 196
799*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051782 | Biological Process | negative regulation of cell division |
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MMSSQNFNNG HITDMALFPL APIPHSSHSL TNPEMGLQIF RPSLFQSKEM KETKEEDVYF 60 GIHSKNLSLK LGDEEVEEKS SVSVKIGYSK LCSRGHWRPA EDAKLKELVA EYGPQNWNLI 120 AEHLDGRSVF LILITGKSCR LRWFNQLDPR INKGTFSEEE EERLLAAHKM YGNKWAMIAR 180 LFPGRTDNAV KNHWHVIMAR RHREQCSVYR RRKPVFESIS KGLKLSLSNN AASDSTISST 240 IDGNASARTN LSLTPSSANL SPQLFHKLVT PVPNHQGHGS LIMGKSRENV VATRDASFDK 300 YFGASKKQEQ VEKLKVIDVV QSNFSDSNSE VSASESVTTN RSNISISGES ENIGAKNFNM 360 LPFIDFLGVG ALHS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC157472 | 1e-121 | AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence. |