PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30161
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 524aa    MW: 57958 Da    PI: 5.9696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09336383455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA30161 336 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 383
                                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17330401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-10330387No hitNo description
Gene3DG3DSA:4.10.280.109.6E-17332400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6336383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MENQFFSNTN VSQNLQPSSM PTWQSLSSSE QQQQQQNQDC FYTQTTWEKS TTDQCIQQFD  60
SALSSMVSSP AASNSNMSNE NFVIRELIGK LGNIGNCSDE ISQTLIATNS YNTSCYNTPL  120
NSPPKLNIQT MAMNSTVAEF STDPGFAERA AKFSCFGSRS FNGRTTQTQL NQTQRSTPLM  180
ENGKLSRVSS SPSLKELGSQ SQLGIQENMN CSSQLQDQIE VNNNSQEEST ISENGVKPSP  240
YVNSRKRKVS SKGKTKENST SSNPPMACEG VEDSNSKRMK TNDGEKIENG KVKTEEELKG  300
GINSNDEKQN KSNTKPPEAP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  360
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLATVNTRM DLSIESLISK DIFQPNNSLA  420
HPIFPQDSSA PSYYGQQNPA IHNNISNGNV THNSVDPLEN GLFQNLGMHL SSLSGFNDAA  480
SQYPLTFSED DLHSIVQMGF GQTDNRKTPI QFQNLNGTNQ LPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448523.10.0transcription factor bHLH62
TrEMBLA0A072U9Q40.0A0A072U9Q4_MEDTR; BHLH transcription factor
STRINGXP_004492265.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-108bHLH family protein