PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30154

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 323aa MW: 35960.6 Da PI: 5.4098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30154	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	105	126	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+k Fs++ + H++ H Tp57577_TGAC_v2_mRNA30154 105 PCHYCDKKFSSPQAFGGHQNAH 126 6**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.785	104	131	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.49E-5	105	133	No hit	No description
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSERISIENV EDRKLKHKME EKSEPRFEKE PKALPASSQS DVEAIVTPRL DICTKSTSTP 60 LEIGEHSNSS QNATGELSSQ NTTGEPSYKN ATDEPLPEQE VREIPCHYCD KKFSSPQAFG 120 GHQNAHKRER YFKKIEDQRR EDEINSIIGF RSSNQIYPYS FSSPINYQRY SYFRNANFPH 180 LISPSMNNTM TSWASGSPSS GYGGLYMPNT TPTIPQFVMQ MPNSSFTTPQ FGIPNFWDGN 240 QNASLPIPQR SNTFGLGLFS QANQTPSIVE GAERNVNAQL GSQTLQLLPH DPIREGPNQA 300 NPNTSLSSAQ STSEEVNLDL TL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30154

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626741.1	9e-92	zinc finger protein 1-like
TrEMBL	A0A2K3LQQ5	0.0	A0A2K3LQQ5_TRIPR; Zinc finger protein
STRING	AES79570	3e-91	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16711	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30154