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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA30083 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 270aa MW: 30917.1 Da PI: 7.7146 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA30083 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.1 | 1.5e-18 | 108 | 162 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k
Tp57577_TGAC_v2_mRNA30083 108 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTK 162
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 125.6 | 2.3e-40 | 108 | 197 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+kk+rl+k+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev
Tp57577_TGAC_v2_mRNA30083 108 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEV 191
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreel 91
+eLr +l
Tp57577_TGAC_v2_mRNA30083 192 QELR-AL 197
***9.55 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0010016 | Biological Process | shoot system morphogenesis |
| GO:0010017 | Biological Process | red or far-red light signaling pathway |
| GO:0010218 | Biological Process | response to far red light |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048364 | Biological Process | root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MCYIRHEHIF YQKYQGFFNL IDDLILHADR DSETCRGEER SLLLRGIDVN RLPSGADCEE 60
EAGVSSPNST VSSVSGKRSE REVTGEDLDM ERDCSRGISD EEDAETSRKK LRLTKDQSII 120
LEESFKEHNT LNPKQKLALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLKRCCENL 180
TDENRRLQKE VQELRALKLS PQFYMQMTPP TTLTMCPSCE RVAVPTSAVD ASTRRHPMAP 240
THPRAFPMGP WATAAPIQHR PFDPIRPRS*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 106 | 112 | SRKKLRL |
| 2 | 156 | 164 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT052129 | 0.0 | BT052129.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA. |
| GenBank | BT135217 | 0.0 | BT135217.1 Medicago truncatula clone JCVI-FLMt-12I21 unknown mRNA. |
| Publications
? help Back to Top |
- Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
Plant Signal Behav, 2014.
[PMID:23838958] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
Front Plant Sci, 2016. 7: p. 1010
[PMID:27462337] - Müller-Moulé P, et al.
YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
PeerJ, 2016. 4: p. e2574
[PMID:27761349] - Ivarson E, et al.
Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
Front Plant Sci, 2016. 7: p. 2032
[PMID:28119714] - Kasulin L, et al.
A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
Mol. Ecol., 2017. 26(13): p. 3389-3404
[PMID:28316114] - Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
Sci Rep, 2017. 7(1): p. 16101
[PMID:29170398]
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