PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29601
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 267aa    MW: 30904.2 Da    PI: 8.0588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29601genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-18956148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd+ll+d+++++G g W++++++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA29601  9 KGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 56
                               79********************************************97 PP
2Myb_DNA-binding45.91.3e-1462107148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                r +++++E +  ++++k+lG++ W++Ia++++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA29601  62 RESFSEDEVDMMLRLHKLLGNR-WSLIAARLP-GRTANDVKNYWHTHL 107
                                6789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.91460IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-21559IPR009057Homeodomain-like
SuperFamilySSF466892.11E-286103IPR009057Homeodomain-like
SMARTSM007175.2E-14858IPR001005SANT/Myb domain
PfamPF002498.6E-17956IPR001005SANT/Myb domain
CDDcd001677.39E-101156No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2260111IPR009057Homeodomain-like
SMARTSM007172.7E-1461109IPR001005SANT/Myb domain
PROSITE profilePS5129419.33561111IPR017930Myb domain
PfamPF002493.1E-1362107IPR001005SANT/Myb domain
CDDcd001671.06E-964107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEKTRGVRKG AWTYEEDKLL KDCINKYGEG KWHLVPQRAG LNRCRKSCRL RWLNYLNPTI  60
NRESFSEDEV DMMLRLHKLL GNRWSLIAAR LPGRTANDVK NYWHTHLRKK VVPRKIEEKK  120
KPIEITIKAH EIIKPQPRTF SSHSLWLNGK HNNFAKPPIV TVSTKDFPVA KDSDKECTML  180
PINGDGDSAA QPYAENSTMS TMWWDSLLNV SNDKIGSCSL LQEKEYSNLE FENVENFLNE  240
DSNINVSECY WESNICEFDS LLDILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2591117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995670.0KM199567.1 Trifolium repens isolate Tr_BX1 R2R3 MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616359.11e-139transcription factor MYB113
SwissprotQ9FNV95e-59MY113_ARATH; Transcription factor MYB113
TrEMBLA0A097J9V51e-174A0A097J9V5_TRIRP; R2R3 MYB protein
STRINGAES993171e-138(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]