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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA29561 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
bZIP |
Protein Properties |
Length: 287aa MW: 30425.1 Da PI: 7.1685 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA29561 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 66.3 | 5.3e-21 | 190 | 252 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ +++l se+
Tp57577_TGAC_v2_mRNA29561 190 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLEVSRIRSDYEQLLSEN 252
89**********************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
Download sequence Send
to blast |
GNTPASMETD GKPPEVKEKL PIKRSKGSLG SLNMITGKNN EHGKTTGTSA NGIHSKSGGE 60 SGSFEGTSEG SDANSQNDSQ LKSGDRRDSF EGEPSQNGSS AHTSQNGGLN APHTVVNQSM 120 PVLPISASGA PGAVAGPATN LNIGMDYWGT PTSSNIPALR GKVPSTTVAG GVVTGGSRDS 180 VQSQLWLQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRADVLKEE NASLRLEVSR 240 IRSDYEQLLS ENAALKERLG EQPGSDQHVR NDTQQSGQTE DVQGGH*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 206 | 212 | RRSRLRK |
2 | 206 | 213 | RRSRLRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G35530.1 | 1e-82 | basic region/leucine zipper transcription factor 16 |