PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29550
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 690aa    MW: 80127.9 Da    PI: 8.9205
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29550genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.6e-2218108291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                fY+ YA+  GF vrk+ ++ s+++g+i+kr++vC++ g+r++++    +++r++r+ trt+C+a+++v  +  +++w+v ++e+
  Tp57577_TGAC_v2_mRNA29550  18 FYEMYAEYHGFAVRKDFKE-SDMEGNIVKRQLVCNRRGQRHKRHLLrVNRRREPRPITRTDCRARIHVAYNVeTKRWRVVTFES 100
                                9*************99755.569999****************998756788889****************9999********** PP

                       FAR1  84 eHnHelap 91 
                                 HnHel p
  Tp57577_TGAC_v2_mRNA29550 101 VHNHELIP 108
                                *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2018108IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.5753107IPR003657WRKY domain
PfamPF105512.8E-9268305IPR018289MULE transposase domain
PROSITE profilePS5096610.052486524IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6499526IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MMILREMEFE SEQNVVAFYE MYAEYHGFAV RKDFKESDME GNIVKRQLVC NRRGQRHKRH  60
LLRVNRRREP RPITRTDCRA RIHVAYNVET KRWRVVTFES VHNHELIPRR FVHCIPKYRR  120
LSEADKALAD GLHTCGVRTC HILGFMMAQK GGHEGLGFIK KDLYNYFSNG AKARRENGDA  180
IAALCYFQSK ADNEPMFYSK FTIDNGRLQN LFWSDGTNRF DFECFGDVLA FDTTYKRNRY  240
NKPFVIFSGL NHHGEXXXXX XXXXXXXXKH PRVVVTDGDG AMREAIRVEF PNAFHRLCSW  300
HLHQNAIQNV KSPKFVEEFN SLMYADYFPE KFETEWKRST DDCDVSNHKW VKKVYEMKTM  360
WASAYMRDKF VCGVRTTSRC EGINSFIKGY VEKKNSLVEF IHNFERAVKE YRHNELLSDF  420
NSLYYEPVLT NALEGIEIDA SKVFTRNKFR EVKKRIEGAG ALNVIERTEL GNNVTLKMNR  480
FCNPNLNISV RLDKVENIFS CDCSLFEREG IPCSHVICAM RHEHINVFPK SLICKRWTKS  540
AKNDYISSTT SFEECDSEKL FMFRRGAMSA AFNTLCEVSC KHDGSYKEAI IEGLHNLLEK  600
IRRHQDGNNK NNANPSIIGD PENVKSKGAP RRNKKSCGNR YCTRCKRPNH TKQTCPLRDA  660
PGDLHQVEGE GSAGQPNDES MDFNVSLLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3L3840.0A0A2K3L384_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-87FAR1-related sequence 5