PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2951
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 136aa    MW: 15302.9 Da    PI: 10.8035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2951genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.2e-1543135197
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               ff++l+++ +l +g+l++p     + +++     + ++ +   rsW+vkl    + k+g   l++GW+ F+++ gLk gD++vF+
  Tp57577_TGAC_v2_mRNA2951  43 FFTILIKPCHLLKGQLWIPSLKGVTQNKD-----KFVMLQIGKRSWNVKLLRcnDVKKG-RRLSGGWSVFASESGLKPGDICVFE 121
                               78889999999999999997665333333.....69999***********665533433.469********************** PP

                               E-SSSEE..EEEEE CS
                        B3  84 ldgrsefelvvkvf 97 
                               l+++++  ++v+vf
  Tp57577_TGAC_v2_mRNA2951 122 LINKNDLVFKVHVF 135
                               **888887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1739135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1639135IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.77343135IPR003340B3 DNA binding domain
PfamPF023629.4E-1343135IPR003340B3 DNA binding domain
CDDcd100172.41E-1443135No hitNo description
SMARTSM010192.9E-743133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
LFYIAHINAG ETENTTKRTS SLNRPREARG QEIAAKFISS NPFFTILIKP CHLLKGQLWI  60
PSLKGVTQNK DKFVMLQIGK RSWNVKLLRC NDVKKGRRLS GGWSVFASES GLKPGDICVF  120
ELINKNDLVF KVHVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-161313518140B3 domain-containing transcription factor VRN1
4i1k_B4e-161313518140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2951
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095114e-40CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600452.11e-55B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3PKV92e-62A0A2K3PKV9_TRIPR; B3 domain-containing protein (Fragment)
STRINGAES707035e-55(Medicago truncatula)
STRINGAES858335e-55(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-17related to vernalization1 1