PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29460
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 1126aa    MW: 125996 Da    PI: 6.5722
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29460genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22126227199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +g
  Tp57577_TGAC_v2_mRNA29460 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAG 207
                                99*****************************954.4444.48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++++l++++ r+
  Tp57577_TGAC_v2_mRNA29460 208 DSVLFI--RDEKQQLLLGIKRS 227
                                ******..55788789988775 PP
2Auxin_resp120.61.2e-39252334183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaas++s+F+v+YnPr+s+ eFv++++k++kal+++vs+GmRf+m+feteds  rr++Gt++g+sdldp rW+nS+Wr+L+
  Tp57577_TGAC_v2_mRNA29460 252 AAHAASNNSPFTVFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPARWKNSQWRNLQ 334
                                79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-19125217No hitNo description
PfamPF023621.3E-20126227IPR003340B3 DNA binding domain
SMARTSM010197.9E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167126228IPR003340B3 DNA binding domain
PfamPF065077.5E-35252334IPR010525Auxin response factor
PfamPF023097.3E-99941083IPR033389AUX/IAA domain
PROSITE profilePS5174523.1099971081IPR000270PB1 domain
SuperFamilySSF542773.24E-810101075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKAI NSELWHACAG PLVSIPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAML ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRSSRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTVFYNPRT SPCEFVIPLA KYNKALYTHV SLGMRFRMMF  300
ETEDSGVRRY MGTITGISDL DPARWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPGMP EDESEIENAF KRAMPWLGDE LGMKDASSSI FPGLSLVQWM  420
SMQQNNNQFS APQSGLLPPS MLSSNTMHAN LNTDDPSKIL NFQSPAGLSA PSLQFNKPNL  480
PNQVNQLQQS PNAWSQQQQQ QQKMLSMLQT PLNQLQQQQQ QQQRQHQLAG PQNLPQTQQQ  540
QPQLTQPNAH QPQQQQHQQL QQQQHQQPNQ NTTMNNGTVG SNQMPNQCVQ QPVTYSPLQQ  600
QLLSGNVQTQ QNFQSVGKNG LIMTSLPQDS QFQQQIDQQQ QAGLLQRQQQ QQQQTQLQQS  660
SLQLLQQSML QRAPQQSQMT QISPKNTSDQ QQQMQLLQKL QQQQQPLSTS SPLSQSQLLQ  720
QQNQQPQQPM SQHHQHQQPQ QLGNNAFLME KLLNNNYSSS AVMHPQQLPV NNHHNTQKSP  780
TNTRAPSAFT DGDAPSCSTS PSTNNCQTSP PNLLKRNQPE PFGGPLIVET NTNMMQELQS  840
KSDMQNKHEL QGVKGPDKQK YKGAINDQME ASSGTSYGID PGNIHQNFPL SNFYMDSDVH  900
SQQPRSNLPF ASNLDGLTPD PLLSRGYDSQ KDLQNLLSNY GGAPRDIETE LSTADISSQS  960
FGVPNMSFKP GCSSDIAIPD TGVMNNGLWS NQAQRMRTYT KVQKCGSVGR CIDVTRYKGY  1020
EELRNDLARM FGIEGQLEDP LRTDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA  1080
EVQQMSLEGD LGYVPITNQA CSGSESGNAW RAQQYDDNSA ASFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463581.10.0auxin response factor 19 isoform X1
TrEMBLA0A2K3NQ780.0A0A2K3NQ78_TRIPR; Auxin response factor
STRINGGLYMA15G19980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19