PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29334
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 379aa    MW: 44160.4 Da    PI: 7.4019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-16119165148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g W  eEd +l+++vkq+G + W++Ia+++  gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA29334 119 KGQWANEEDRKLIRLVKQYGERKWAKIAEKLE-GRVGKQCRERWHNHL 165
                                799*****************************.*************97 PP
2Myb_DNA-binding55.41.4e-17171213145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                +++W++eE+++lv  +++ G++ W+ Ia++++ gRt++ +k++w+
  Tp57577_TGAC_v2_mRNA29334 171 KDNWSEEEEKILVAMHAKIGNR-WSEIAKKIP-GRTENAIKNHWN 213
                                689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.794114169IPR017930Myb domain
SMARTSM007175.3E-15118167IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-28118212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27120172IPR009057Homeodomain-like
CDDcd001676.81E-14122165No hitNo description
PfamPF139217.3E-18122180No hitNo description
SMARTSM007171.6E-16170218IPR001005SANT/Myb domain
PROSITE profilePS5129419.723170220IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-21173218IPR009057Homeodomain-like
CDDcd001675.24E-12173216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MIRGGNYGVN SVKIFGNENI NSIDPFMDRF LWDQMMTHYP NHQQNSASVF PYSYGSNYEF  60
MWPNAQESIN RVIANEEASE WNNFNQNPTF CLKDIHGYGE NTKILESKST KDTSMVLIKG  120
QWANEEDRKL IRLVKQYGER KWAKIAEKLE GRVGKQCRER WHNHLRPDIK KDNWSEEEEK  180
ILVAMHAKIG NRWSEIAKKI PGRTENAIKN HWNATKRRQN SRRKNKKNET SKGSKPKSSI  240
LEDYIKKTNT SITTSKITNI PSSSHSTLSQ KLQENQPNLL FNELPSDSFS NEYLKFFQGN  300
IVDDVNESGF INSIHQYPNY NMHLDETTPM NNFLSYDLYL SQFTMLMLIS QFPLIMHEEG  360
KLDLDFQQED QDFLEGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-441162191104C-Myb DNA-Binding Domain
1msf_C7e-441162191104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337661e-100CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735101e-100CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640698.11e-170transcription factor MYB119
TrEMBLG7K6C70.0G7K6C7_MEDTR; Myb transcription factor
STRINGAES985650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-56myb domain protein 119