PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 264aa MW: 30108.9 Da PI: 8.1758 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.2e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Tp57577_TGAC_v2_mRNA2930 61 YSCHFCKREFRSAQALGGHMNVH 83 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.05E-6 | 58 | 88 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEESQNMMWM KRKQVLNSHI EEVPSFEVGA MNMNNKSWEE KAFAEDAARI LGGCIWPPRS 60 YSCHFCKREF RSAQALGGHM NVHRRDRAKL KQSLGHHNEL DLHSLHKNHF TTSRVNSSSW 120 PSTISTQENC FESNMSSSYS SSIRWGNYNH MVSHDFEPKG LLVNAREQIF KGYSCNDYVE 180 TSLSMGQNNS MFGQKLLTDD FCGDKGSNTC KKPRTSSIFH HKPCLNDRCL TFQSADQFVN 240 IGIKPGMEDL DLELRLGKLT QKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRDRAKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2930 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-54 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460707.1 | 1e-140 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A072UZ72 | 1e-139 | A0A072UZ72_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | XP_004503164.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-25 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2930 |