PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2924
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 349aa    MW: 39040.5 Da    PI: 4.5041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2924genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.91.6e-14166202135
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg  +  Tp +Rrgp g+++LCnaCGl+++ kg+
  Tp57577_TGAC_v2_mRNA2924 166 CQHCGIGEksTPVMRRGPAGPRSLCNACGLMWANKGT 202
                               ****865556************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.7E-52661IPR010399Tify domain
PROSITE profilePS5132012.1752661IPR010399Tify domain
PfamPF062007.1E-83060IPR010399Tify domain
PROSITE profilePS5101713.02797139IPR010402CCT domain
PfamPF062031.2E-1597138IPR010402CCT domain
SMARTSM004012.1E-12160213IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.735160217IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11162213No hitNo description
Gene3DG3DSA:3.30.50.109.4E-15164207IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-13165208No hitNo description
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
PfamPF003201.7E-12166202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVNSSQNNNG LMLHSVVSDE GEQQPPLSRA NELAISFEGE VYVFPSITPE KVQAVLLFLG  60
GQETLNAVTT SDCLVQQKCQ DVWGINDPSR SSKLSRRIES LVRFREKRKE RCFEKKIRYT  120
CRKEVAERMQ RKNGQFASLK EEYCSPSENQ DSSNGTPCSE STERRCQHCG IGEKSTPVMR  180
RGPAGPRSLC NACGLMWANK GTLRDLSKAG GIALEQNELD TSTDIKPLKT EPENSCLAQD  240
KEDTSTNIKP LKTEPENSCP AQDKEESPQE TKPVLMDARQ PHEMINEQYM LESAEAVTHN  300
LSIQVEDLLD QDNTMEDFAD ASGTEFEIPA GFDDLIDIED SNMRTYWL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063581e-33AP006358.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT36C13, TM0100b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504860.11e-180GATA transcription factor 19-like
SwissprotQ8H1G08e-60GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S2YHF61e-178A0A1S2YHF6_CICAR; GATA transcription factor 19-like
STRINGXP_004504860.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-51ZIM-LIKE 2