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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YC | ||||||||
Protein Properties | Length: 183aa MW: 20413.1 Da PI: 4.0932 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.3 | 1.4e-17 | 16 | 97 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 + e+P +r+kki+ dedvk++s+ea l+sk+ elf+ l+ +s a e+kr+t+k i av+r i dfl+d p Tp57577_TGAC_v2_mRNA29233 16 EPEFPKSRVKKIMTLDEDVKRVSSEALFLVSKSTELFLQLLAEKSAEVAIEKKRKTVKLEHIRIAVKRNRpISDFLLDSLPM 97 679***************************************************************9875489*****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.5E-19 | 17 | 84 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-19 | 18 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-20 | 19 | 96 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVMVMAEEEE NALSIEPEFP KSRVKKIMTL DEDVKRVSSE ALFLVSKSTE LFLQLLAEKS 60 AEVAIEKKRK TVKLEHIRIA VKRNRPISDF LLDSLPMPSE TTKSDKPVVV ADRPKSSEAQ 120 AQVEAEVEAQ VEAEVEAQIE AQVEAQLEDE IEVQVEAQLE DEIEVQVEAQ ASEPVPEPME 180 ES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29233 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027190560.1 | 2e-69 | nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2K3NUG6 | 1e-114 | A0A2K3NUG6_TRIPR; Nuclear transcription factor Y subunit C-4-like protein | ||||
STRING | XP_004502298.1 | 7e-69 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 9e-39 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29233 |