PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28891

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 762aa MW: 87619.8 Da PI: 8.7816

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28891	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.6	9.4e-14	46	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fY +YA+ GF ++++s+k ++g+ + Cs+eg+r ++ + +t +++ +C k+++k+ kd+ w+++k+e + Tp57577_TGAC_v2_mRNA28891 46 SFYGKYASIKGFGWKIRTSRKG-EDGKLNYLMLSCSREGRRGSKIPC---TLKTLPTKVKNCPSKITIKLAKDELWYIKKFEPN 125 59**************9998.8888**********999877...7889999999******************** PP FAR1 85 HnHela 90 H+H+++ Tp57577_TGAC_v2_mRNA28891 126 HSHTIS 131 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-11	46	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-36	252	346	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	535	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-4	548	575	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MDSTNSMDTC VGFDGEASGV DSYNGEQESW EPATGMSFSS IDEVKSFYGK YASIKGFGWK 60 IRTSRKGEDG KLNYLMLSCS REGRRGSKIP CTLKTLPTKV KNCPSKITIK LAKDELWYIK 120 KFEPNHSHTI SPTKSRLFKA NKNLSMHVKR TIHINDDAGV RINKTFQTLV RDAGGYENVA 180 FCERDVRNFV NKERRVIGKD GDGKALISYF CQMREQNTNF FYDIDLDDDF HVRNVFWADA 240 RSRAAYESFG DVVTFDTTYL TNKYDMPFAA FVGVNHHGQS TLLGCGLLSA EDTELFVWLF 300 QSWLRCMLGK APAGIVTDQC KAMQNAIELV FPTTRHRWCL WHIMKKIPEK LSRYDEYKNI 360 TFAMKESVYD TITLTEFEEK WCSFVNKFEL EHNVWLSGLY KECHRWVPIM LKKYFWAGMS 420 TTQRSESIHA FFDGYINSTT TLHQFVKQYD NALRSRAEKE FEADFQSMDT IIPCGSNSLI 480 EKQFQGEYTH AKFKEVQVEF RAKMNCVPSL KTEEGNLATY HVLEEMLVGD RTKDRIVKVV 540 FDRGNHDVSC ECSLFEFRGI LCRHVLCVCT QERVKNMPLK YVLVRWSKNV KRKHSYIKTS 600 YSVTELKPQM DRFENLCKHF YEVAEVAADF EDATKALHER LHEFKSNLLC MVATSNNVNK 660 SSNNDSNPNN ITRRNENVIV EIRSPLRVTR RGRPPLNRKI SAVEKVVQKS KKRRTDKRGD 720 KLTTKVNVVT DGVVNVGGNA SFTDLLTSEI DFTGSSQFST N*

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MDSTNSMDTC VGFDGEASGV DSYNGEQESW EPATGMSFSS IDEVKSFYGK YASIKGFGWK  60
IRTSRKGEDG KLNYLMLSCS REGRRGSKIP CTLKTLPTKV KNCPSKITIK LAKDELWYIK  120
KFEPNHSHTI SPTKSRLFKA NKNLSMHVKR TIHINDDAGV RINKTFQTLV RDAGGYENVA  180
FCERDVRNFV NKERRVIGKD GDGKALISYF CQMREQNTNF FYDIDLDDDF HVRNVFWADA  240
RSRAAYESFG DVVTFDTTYL TNKYDMPFAA FVGVNHHGQS TLLGCGLLSA EDTELFVWLF  300
QSWLRCMLGK APAGIVTDQC KAMQNAIELV FPTTRHRWCL WHIMKKIPEK LSRYDEYKNI  360
TFAMKESVYD TITLTEFEEK WCSFVNKFEL EHNVWLSGLY KECHRWVPIM LKKYFWAGMS  420
TTQRSESIHA FFDGYINSTT TLHQFVKQYD NALRSRAEKE FEADFQSMDT IIPCGSNSLI  480
EKQFQGEYTH AKFKEVQVEF RAKMNCVPSL KTEEGNLATY HVLEEMLVGD RTKDRIVKVV  540
FDRGNHDVSC ECSLFEFRGI LCRHVLCVCT QERVKNMPLK YVLVRWSKNV KRKHSYIKTS  600
YSVTELKPQM DRFENLCKHF YEVAEVAADF EDATKALHER LHEFKSNLLC MVATSNNVNK  660
SSNNDSNPNN ITRRNENVIV EIRSPLRVTR RGRPPLNRKI SAVEKVVQKS KKRRTDKRGD  720
KLTTKVNVVT DGVVNVGGNA SFTDLLTSEI DFTGSSQFST N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28891

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642224.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z6M8U9	0.0	A0A2Z6M8U9_TRISU; Uncharacterized protein
STRING	GLYMA11G13523.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-126	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28891