PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28849
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 295aa    MW: 34184.6 Da    PI: 6.5107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28849genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12230275655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR ri +++ +L+el+P+     +k  + ae+L +Av Y+k Lq
  Tp57577_TGAC_v2_mRNA28849 230 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTAEMLDEAVAYVKFLQ 275
                                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16227292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-11228279No hitNo description
Gene3DG3DSA:4.10.280.105.4E-16229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-9230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPNYSRVIFS YTYMDTWVLP QGWIDTMDDI HHHDLLVTVI PSRYTNYANA PKDLLYVFLC  60
AGQYFMQNIS VLDQDQILLQ DLHGYVDCQT QMPKNLSESI SYVAKLDSRD QAIYSXXXXX  120
XXXXXXXXXX ENKDIEERYK LKKKTAVRTE PKVXXXXXSN SDSQSQPYLS HYYYNSSTHT  180
PTSANASNNP FTQGVEDSAD ALDLKMDKIL EDSVPCKIRA KRGFATHPRS IAERVRRTRI  240
SDRIRKLQEL VPNMDKQTNT AEMLDEAVAY VKFLQNQIEE LTEQQRRCKC TIHE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28849
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1470501e-132BT147050.1 Medicago truncatula clone JCVI-FLMt-21K14 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.19e-40bHLH family protein