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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22955.9 Da PI: 10.068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.9e-14 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +grW AeI+d s ++ r +lg+f+ ae+Aa ++ a++ l+g Tp57577_TGAC_v2_mRNA2879 53 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAAMSYDSAARILRG 103 5899******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-29 | 53 | 113 | No hit | No description |
PROSITE profile | PS51032 | 19.757 | 54 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-8 | 54 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-32 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 54 | 112 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-27 | 54 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MENKDTSKLP NQTHQTHNNK NMSLISHEID KSNENKKTST LKKIPKISNK GQKKYLGVRQ 60 RPSGRWIAEI KDSSQKLRLW LGTFDRAEDA AMSYDSAARI LRGRNAKTNF PNTHEQDFSI 120 LGKNPRAFQL LKHAMMKNHA VSSSSSVYSS FMMPWKNNDQ LDDAIVEETI VCSVADEGEG 180 SAIGCSGITF GSSKVYSSVV VAPSFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 53 | 111 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2879 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609147.1 | 1e-114 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2K3N7E4 | 1e-116 | A0A2K3N7E4_TRIPR; Ethylene-responsive transcription factor erf086-like protein | ||||
STRING | AES91344 | 1e-113 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-26 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2879 |