PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28728
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 252aa    MW: 29779.4 Da    PI: 8.3792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28728genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162065147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rg W + Ede+l ++v  +G+++W++Ia+ +  gR++k+c++rw++ 
  Tp57577_TGAC_v2_mRNA28728 20 RGHWRPSEDEKLRELVVSYGPHNWNAIAENLR-GRSGKSCRLRWFNQ 65
                               899*****************************.***********996 PP
2Myb_DNA-binding57.33.5e-1872116147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r ++T+eE+e+l+  ++ +G++ W+ Iar+++ gRt++ +k++w+  
  Tp57577_TGAC_v2_mRNA28728  72 RSPFTEEEEERLITSHRIHGNR-WAVIARHFP-GRTDNAVKNHWHVM 116
                                789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8821566IPR017930Myb domain
SMARTSM007172.7E-141968IPR001005SANT/Myb domain
SuperFamilySSF466896.47E-2920113IPR009057Homeodomain-like
PfamPF002494.3E-162065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-262173IPR009057Homeodomain-like
CDDcd001678.00E-132364No hitNo description
PROSITE profilePS5129424.61367121IPR017930Myb domain
SMARTSM007171.6E-1671119IPR001005SANT/Myb domain
PfamPF002492.6E-1572115IPR001005SANT/Myb domain
CDDcd001671.47E-1274117No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2174119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSLSTSCLQY YIGRYNMCSR GHWRPSEDEK LRELVVSYGP HNWNAIAENL RGRSGKSCRL  60
RWFNQLDPRI NRSPFTEEEE ERLITSHRIH GNRWAVIARH FPGRTDNAVK NHWHVMMARM  120
RRERYKIYAK GPLDHHIIFS PNGHQPNFER TNLHSFVEKY HEKPTYPCVS LSHFKFPKFH  180
FQDPSSCSTM LQDKTQTQSV EFYDFLQVDS NKSEVTDNAR KDDEEVNQDV VKLQNNENNV  240
PFIDFLSTEK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31201197106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RMRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28728
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620059.21e-153transcription factor MYB52
SwissprotQ6R0C42e-79MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2Z6MT021e-163A0A2Z6MT02_TRISU; Uncharacterized protein
STRINGAES762771e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.17e-82myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]