PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28629

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 210aa MW: 24140.5 Da PI: 4.793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28629	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.1	1.4e-17	50	98	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ L Tp57577_TGAC_v2_mRNA28629 50 RSKHSETEQRRRSKINERFQVLRDLIPEN----DQKRDKASFLLEVIEYIQFL 98 899***********************9....9***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.1E-24	47	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.377	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-20	48	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.76E-15	50	103	No hit	No description
Pfam	PF00010	5.0E-15	50	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-13	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MARSAKGNQD EELVDDDDQD LFTANNSSSL NNNNAKVDEP NRGKRANPHR SKHSETEQRR 60 RSKINERFQV LRDLIPENDQ KRDKASFLLE VIEYIQFLKE KLQVYEQSYE GWSQEPTKLI 120 PWRNLHGPAE NTTDASRAIQ NGSIQNGMVT QQMMELPVSN ADMDTNLQHQ VWLSKPNKDY 180 IVPNNTLKDQ EEMKIESGSE SDSVSSAYSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28629

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172742	1e-35	AC172742.2 Medicago truncatula chromosome 7 clone mth2-16i6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027352302.1	1e-90	transcription factor BIM2
Swissprot	Q9CAA4	8e-42	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2K3LR39	1e-119	A0A2K3LR39_TRIPR; Transcription factor BIM2-like protein (Fragment)
STRING	AES77795	5e-85	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	9e-41	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28629

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]