PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28171
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 189aa    MW: 21411.2 Da    PI: 5.0294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28171genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00024062123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C  C++ F++   L  H++ H
  Tp57577_TGAC_v2_mRNA28171 40 YECVFCKRGFTTAQALGGHMNIH 62
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-43866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.19E-63866No hitNo description
PROSITE profilePS5015710.994067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEFSYLQEDS KSSSDENIDR SSDQNNDDDH DRDMGIGRSY ECVFCKRGFT TAQALGGHMN  60
IHRKDRANNN KSVTKTNYAP PSSSKLDNYG DLGFYSTINP SHLTRGGYYS TISSTTNPPE  120
VDSLNYHQIY FPSHHVQYSE MLCVENQRMF GQDWSGLSLY TNPLSKDKIE NNNGVDELDL  180
ELRLGHYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414180.0BT141418.1 Medicago truncatula clone JCVI-FLMt-1D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468537.11e-114zinc finger protein GIS
TrEMBLI3SLS01e-113I3SLS0_MEDTR; Transcriptional regulator superman protein
STRINGXP_004495117.12e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein