PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28121
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family E2F/DP
Protein Properties Length: 344aa    MW: 37651 Da    PI: 5.5053
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28121genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.5e-2792174271
                    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneir 68 
                                ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+
  Tp57577_TGAC_v2_mRNA28121  92 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpinsvlspdkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 171
                                789********...*****999*******************************************************.****** PP

                    E2F_TDP  69 wkg 71 
                                w+g
  Tp57577_TGAC_v2_mRNA28121 172 WRG 174
                                *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.0E-1294343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.5E-4687179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3491174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-2593174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-2194175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.94E-43179282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-42180295No hitNo description
SMARTSM011381.4E-71181341IPR014889Transcription factor DP, C-terminal
PfamPF087812.9E-40182296IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGTRPQQSCV DEEDEELLGC GTTISGQSGS TSRSAGLPSS RSEQTIGTSA GDTAALKMNH  60
LGIQDDEAGS QGVVASKKKK RGQQRAVGGD KNGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPI NSVLSPDKQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWRGLPRTSL  180
NDIEELKTER LGLRNRIERK SSYLQELEEQ FVGLQNLIQR NEQLFSSGNA PSGGVSLPFI  240
LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMELGDRPQS DTVTPNVTNG  300
GEGSSMSGIH QSQVPPSASS VSIRPPTSPP LPGILKARVK QEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3585179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505604.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-150DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K3NXY40.0A0A2K3NXY4_TRIPR; Transcription factor-like protein DPB-like
STRINGXP_004505604.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-145Transcription factor DP