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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20986.5 Da PI: 9.7938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Tp57577_TGAC_v2_mRNA27776 26 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 75 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-20 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 26 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-25 | 26 | 85 | No hit | No description |
PROSITE profile | PS51032 | 22.3 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-30 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEGGGKGGGE RKRNGGVVVD GGAERRYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSTPI 60 AAARAYDTAV FYLRGPSARL NFPELLAGEN NNNNSVVSCD LSAASIRKKA TEVGARVDAL 120 QATLHHHHHH NHHNHNHRVT PPPPELLNXX XXXXXXXXXX XXXXFAERVD LNKIPEPESS 180 DCEWEVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 27 | 83 | 6 | 63 | ATERF1 |
3gcc_A | 3e-14 | 27 | 83 | 6 | 63 | ATERF1 |
5wx9_A | 4e-14 | 26 | 83 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU846192 | 1e-131 | EU846192.1 Trifolium repens putative dehydration-responsive element binding protein (DREB1-O) gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361041.1 | 2e-75 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 2e-55 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A2Z6MR36 | 2e-90 | A0A2Z6MR36_TRISU; Uncharacterized protein | ||||
STRING | XP_004511898.1 | 7e-75 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 2e-54 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27776 |
Publications ? help Back to Top | |||
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