PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 283aa MW: 31998.4 Da PI: 8.3489 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.1 | 2.3e-26 | 168 | 256 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + k +r+r+++r gC+a++ vk+ek+gkw+vt++ ++H Tp57577_TGAC_v2_mRNA27763 168 FYVGYARRVGFAVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGKDKRPRPSSREGCNATILVKMEKSGKWVVTRFIKDH 251 9*********************************************************************************** PP FAR1 86 nHela 90 nH+l Tp57577_TGAC_v2_mRNA27763 252 NHPLI 256 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-24 | 168 | 256 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MFLANEFYQV FQDVLYLGSE QSPKDYYPNQ QNGTYRQSSM SSSSTTSVHV TALDGLVNVN 60 SLFTIAVFVG LSLTTPGQLN FTYNTPHKII SLQFLLSWLQ IIFKSRFTEK LFLCCFTVCM 120 DFVEVDPDKG NEPDHSCLEE STNIFDGVEV QEPYVGMEFD SEEAARTFYV GYARRVGFAV 180 RVMQRRRSGI DGRTLARRLG CNKQGFSPNN KGTLGKDKRP RPSSREGCNA TILVKMEKSG 240 KWVVTRFIKD HNHPLISTAN GFSTEVSFLL AYNVYLVFHL FK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 221 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157777 | 1e-159 | AC157777.2 Medicago truncatula chromosome 7 clone mth2-25c14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024625371.1 | 1e-90 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_024625372.1 | 1e-90 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2K3P2B4 | 1e-117 | A0A2K3P2B4_TRIPR; Protein FAR1-related sequence 5-like | ||||
STRING | XP_007140743.1 | 1e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.2 | 2e-50 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27763 |